m6AConquer

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Multi-omics objects (MAE)

Single-omics objects (SE)

Orthogonally validated m⁶A sites

Orthogonally validated m⁶A sites and unmethylated background sites

Orthogonally validated differentially methylated m⁶A sites

m⁶A QTL and disease annotation

Multi-omics objects (MAE) for wild type samples

Species	Technique	Strategy	Multi-Omics	Quality Control

Multi-omics objects (MAE) for perturbation samples

Species	Technique	Strategy	Multi-Omics	Quality Control

Single-omics objects (SE) for wild type samples

Species	Technique	Strategy	m⁶A Omics	Transcript Omics	Alternative Splicing	SNP	Quality Control

Single-omics objects (SE) for perturbation samples

Species	Technique	Strategy	m⁶A Omics	Transcript Omics	Alternative Splicing	SNP	Quality Control

Orthogonally validated m⁶A sites (Combined integration)

Species	Technique Pairs	Genomic Ranges	CSV	BED
Homo sapiens (hg38)	All Orthogonally validated m⁶A Sites	RDS	CSV	BED

Orthogonally validated m⁶A sites (Cell-line specific integration)

Species	Technique Pairs	Cell Line	Genomic Ranges	CSV	BED
Homo sapiens (hg38)	All Orthogonally validated m⁶A Sites	HEK293T	RDS	CSV	BED

Orthogonally validated machine learning training data for m⁶A sites prediction (Combined integration)

Species	Technique Pairs	Genomic Ranges	CSV	BED
Homo sapiens (hg38)	All Orthogonally validated m⁶A & Background Sites	RDS	CSV	BED

Orthogonally validated machine learning training data for m⁶A sites prediction (Cell-line specific integration)

Species	Technique Pairs	Cell Line	Genomic Ranges	CSV	BED
Homo sapiens (hg38)	All Orthogonally validated m⁶A & Background Sites	HEK293T	RDS	CSV	BED

Differentially methylated m⁶A sites

Species	Technique Pairs	Treatment	Genomic Ranges	CSV	BED

m⁶A QTL

Species	Technique Pairs	Stringency	Genomic Ranges	CSV	BED