API application program interface
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This set of APIs was made to let our users reach the information they wanted in a new pragmatical way.
| parameter | description | example |
|---|---|---|
| &database= | *essential parameter All databases including m7GDB_NGS_Base-resolution, m7GDB_NGS_m7G-region, m7GDB_NGS_Nanopore_Sequencing and m7GDiseaseDB. |
curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDiseaseDB&species=human' > m7GHub2_human_m7GDiseaseDB.txt |
| &species= | *essential parameter Click here to view the species included in each database. |
curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDiseaseDB&species=human' > m7GHub2_human_m7GDiseaseDB.txt |
| &gene_region= | filters by the Gene Region, only for m7GDB [3' UTR, 5' UTR, Exon, Intron, Downstream, Distal] | curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDB_NGS_Base-resolution&species=human&gene_region=Exon' > m7GHub2_human_m7GDB.txt |
| &cell_line= | filters by the Tissue/Cell Line, only for m7GDB Click here to view Tissue/Cell Line of all species. |
curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDB_NGS_Base-resolution&species=human&cell_line=Hela' > m7GHub2_human_m7GDB.txt |
| &ID= | filters by the ID, only for m7GDB The formats are species_NGS_Base_number, species_NGS_Region_number and species_ONT_number. |
curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDB_NGS_Base-resolution&species=human&ID=human_NGS_Base_1' > m7GHub2_human_m7GDB.txt |
| &technique= | filters by the technique, only for m7GDB_NGS Click here to view technique of all species |
curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDB_NGS_m7G-region&species=human&technique=m7G-MeRIP-seq' > m7GHub2_human_m7GDB.txt |
| &software= | filters by the software, only for m7GDB_NGS_Nanopore_Sequencing [Eligos; Tombo] | curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDB_NGS_Nanopore_Sequencing&species=HomoSapiens&software=Tombo' > m7GHub2_HomoSapiens_m7GDB.txt |
| &m7G_status= | filters by the m7G Status, only for m7GDiseaseDB The formats are species_loss_variant and species_gain_variant. |
curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDiseaseDB&species=human&m7G_status=human_gain_variant' > m7GHub2_human_m7GDiseaseDB.txt |
| &confidence_level= | filters by the confidence level, only for m7GDiseaseDB [low, medium, high] | curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDiseaseDB&species=human&confidence_level=high' > m7GHub2_human_m7GDiseaseDB.txt |
| &RM_ID= | filters by the RM ID, only for m7GDiseaseDB The formats are species_associatedSNP_number. |
curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDiseaseDB&species=human&RM_ID=human_associatedSNP_34899' > m7GHub2_rat_m7GDiseaseDB.txt |
Examples: Click on the link to get the results
- I want to retrive all rat information in m7GDiseaseDB which m7G status is gain variant and confidence level is low.
curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDiseaseDB&species=rat&m7G_status=rat_gain_variant&confidence_level=low' > m7GHub2_rat_m7GDiseaseDB.txt - I want to retrive all human information in m7GDB_NGS_m7G-region which gene region is Exon and Cell Line is HL-60.
curl 'http://www.rnamd.org/m7GHub2/api.php?database=m7GDB_NGS_m7G-region&species=human&gene_region=Exon&cell_line=HL-60' > m7GHub2_human_m7GDB.txt
Download :
- In data page, right-click or Ctrl+S could save data as json format.
- The curl command can be used to download data directly in terminal.
- We support up to 10000 pieces of data display and download. If you would like a larger dataset, please use Download.