RMDisease V2.0 an updated database of genetic variants that affect RNA modifications with disease and trait implication
Basic Info Genetic Variant

Basic information of m6A-containing region involved in : covid19_m6a_associatedSNP_100

RM ID covid19_m6a_associatedSNP_100
Modification Type m6A
Species COVID-19
Chromosome chrMN908947.3
Position 3791-3990
Strand (+)
Reference Sequence
GCTGTCTTTGATAAAAATCTCTATGACAAACTTGTTTCAAGCTTTTTGGAAATGAAGAGTGAAAAGCAAGTTGAACAAAAGATCGCTGAGATTCCTAAAGAGGAAGTTAAGCCATTTATAACTGAAAGTAAACCTTCAGTTGAACAGAGAAAACAAGATGATAAGAAAATCAAAGCTTGTGTTGAAGAAGTTACAACAAC
Alterative Sequence
GCTGTCTTTGATAAAAATCTCTAAGACAAACTTGTTTCAAGCTTTTTGGAAATGAAGAGTGAAAAGCAAGTTGAACAAAAGATCGCTGAGATTCCTAAAGAGGAAGTTAAGCCATTTATAACTGAAAGTAAACCTTCAGTTGAACAGAGAAAACAAGATGATAAGAAAATCAAAGCTTGTGTTGAAGAAGTTACAACAAC
Gene ORF1ab
Gene Type protein_coding
Gene Region Exon (ENSSAST00005000002/ENSSASG00005000002, exon 1 of 1)
Gene ID (Ensembl or others) ENSSASG00005000002
Modification Status covid19 m6a-loss variant
Confidence Level medium
Association Level 0.739
Supported Studies 33961823;GSE167075;MeRIP-seq
Predicted RNA Secondary Structure (Minimum Free Energy Fold by RNAFold) (((.((((((((.....(((((.((...(((((((((...((((((((....))))))))...)))))))))...))..((((.(((....(((((....)))))....))).)))).((((((((........))))))))...)))))..(((((.((((......))))...))))))))))))))))......... (-44.00)
Secondary Structure Graphical Visulization secondary structure
Genome Visualization      

Variant information : covid19_m6a_associatedSNP_100

RM ID covid19_m6a_associatedSNP_100
Variant Position chrMN908947.3:3814
Variant Source National Genomics Data Center
Ref Base T
Alt Base A
RS ID
dbSNP View
Mut Region Exon (ENSSAST00005000002/ENSSASG00005000002, exon 1 of 1)
View this mutation in Ensembl genome browser View